rs36562396 SNP Detail

Summary

• ID
  rs36562396
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:157131329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGGAAA GGGAACATCA
  TCATGGGCAG GGAAAGGAAT CTTGAACTTT GCAAAGAACC TCACTTTCTA TAAATTTCCT
  CCATTTTCAA TATCGTAGTG ATAGGATGAG AGGAAAATAC AAAATCTCAC CATCTTTAAA
  ACGTTTACGT GGCCCAATTG TTAAGCTCTG GCTAGCTTAA AAATAGAACA GTAGGTAGAT
  M
  ATAGAACAAG CATCAACCTT AAAGTGTTGG GATTCCTTAC CTGGGAATAT TATGTTGATC
  TTCCCCTGAA AACAGAAACA GGAGCTCTGA CAGGCATGTT TATGGTTAAA TGATGAAAAA
  GTAAACTAGT GTTTAAAATA TACAACAGTT AGCACAACTG GTGTTAGTAT GATTTGGCTA
  GATACATGTC TGGCTTTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51063024	NES13882842	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36562396					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51063024	NES13882842	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:157131329 () rs orientation: forward

Symbol	Name	Function Class
Rr375964	regulatory region 375964	1350 bp downstream