rs36562508 SNP Detail

Summary

• ID
  rs36562508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:5125800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAATGA CTCTAGCTTA
  ATGTTAGGTT GATATAAAAT CAGCCAGCAC AGCAGACAGA GAAAGATCTG GCCTGAATTT
  AGGTAGTGGG GGAACTGGGC CGTGAAGGAG AAGAACAGAG AAGAGTGGGC ACGCAGATTT
  GAGAGGACCC AGAGATGGAC CGAAAGGCAA GGAGATGGAG AAGCTGTAAG ATGTCTGAGG
  Y
  TTGTGTTTTT ATTTTTAAAA GATCTTGTTC TTTGTTTTGT TTGTTTTTCG AGACAGGGTT
  TCTCTGTGTA GCCCTGGCTG TCCTGGAACT CACTTTGTAG ACCAGGCTGG CCTCAAACTC
  AGAAATCCAC CTGCCTCTGC CTCCCGAGTG CTGGATGAAA GGCGTGCGCC ACCATGCCCC
  ACTGAGATTT TGTTCTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50580598	NES13651870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36562508					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580598	NES13651870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5125800 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm46658	predicted gene, 46658			within coordinates
Rr542924	regulatory region 542924			558 bp proximal
Tmem151a	transmembrane protein 151A			Intron
				Noncoding-Transcript-Variant