rs36562584 SNP Detail

Summary

• ID
  rs36562584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135707216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAGAGGT TCAGCCCCTT
  GCCCCCACGT TCATTTTAGA AAGAAAACAA GGCCTTCAGT TGGCATTTAA ATGAGAGATA
  CTGAGGTAAA AAAAAATTAA AAAGAAATCA AGGAGGAAGG TGGGAGACAG CAGTCGAGTA
  TGGGGATGAG GGGAGGCCAT GAGGCGGGGC GACCAGGAAG GCAAGAAGCA GGCCAGGAGG
  R
  TGTGACGTGA AGAGACATGG CAGCTTCGTT CCAGAGAAGA ATAAGCACCT TTCTGGTTTA
  TGTGTCCTGT GTGCCACACG GCGATCCTGC AGTCAAGCTT CCACACAGAC CCAGGGCTCT
  TTGGACGCCA CCCTGTGTGA GGGGAGGGCA GGGCAGCAGA ACTGACCCAT GGAACACCCC
  TACCCCAAGT TTCAGGTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51451039	NES14001911	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36562584					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51451039	NES14001911	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135707216 () rs orientation: forward

Symbol	Name	Function Class
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63773	transcription start site region 63773	338 bp upstream
Tssr63774	transcription start site region 63774	1045 bp downstream