rs36562732 SNP Detail

Summary

• ID
  rs36562732
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87971744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATAATGA ATATTTTCTT
  ATTTTTAAAT AATATATTTT CAACTTCAAT TAAAAAAATT AGTGGATTAA ATATTACTGG
  TAATATTTTA TATGCCTAAG ACACTATAAA ATAAAACATC ATTTTAAATT TTGCTCAAAA
  GGTAATTCTG CATCATTTAA TACGTGCATA CAAATAGTAT CATTCCATAG AAGACTAAAG
  W
  AGCTGAATAT TAACTTGATC ATCAGTTTGC TAAAATTTTT CAAAAAGCCT CTCTGTAGTT
  TGCATCAAGC ATAAACACAA ATGAGTTCTA AATATTTTAC TGTTAAACAT CATCTTGGAT
  GTAGGAAAAT ACTATTAATT ATAAATACTA ACATTATTCT AAACTAGGAT CGATGAGTAC
  GTGTGTATCC TATATACAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51174248	NES13832863	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36562732					SNP	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51174248	NES13832863	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87971744 () rs orientation: forward

Symbol	Name	Function Class
Csn1s2b	casein alpha s2-like B	within coordinates
Gm42794	predicted gene 42794	within coordinates
Prr27	proline rich 27	1812 bp upstream
Rr378252	regulatory region 378252	189 bp downstream
Tssr46931	transcription start site region 46931	1790 bp upstream
Tssr46932	transcription start site region 46932	1874 bp upstream