rs36562888 SNP Detail

Summary

• ID
  rs36562888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6167541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGCTGAA ATGAAGTTAC
  CCACATGTAT ATCCTCTTCA GTGCTGGGTG GTAGAGTAAC TTGTAAAGTC TGTATTGTCA
  TAACCCCCTC CCTTCTCAGC CACTTCTAAT GAATGAATAT CATGTATGTC CTATTCTCTA
  GACTTTCAGG CCTTAAAGAT GTTGGGACTT TTGTATCACA AACGTCACTG ATGAACAGCT
  R
  AGGAAATATG TATGCTTGAT TGAGATTCAT CTACCAAAAA AAAATCATAG AACAAAATTA
  GTTCATCTAA TTCTTGCCAC AGTCACACAA ATCATTTCTA TTTGTGTTTT GTACCAAAAG
  ACACTGCATT TCTGGGGTCC AGTGCTTTCT TGCTTTCTTT CCTCCCACTG TTTTTTTTTT
  TTTTTTTTTT TTTTTTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640667	NES14035669	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36562888					SNP	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640667	NES14035669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6167541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	859 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	1043 bp upstream
Tssr2757	transcription start site region 2757	1137 bp upstream
Tssr83664	transcription start site region 83664	908 bp upstream
Tssr83665	transcription start site region 83665	929 bp upstream
Tssr83666	transcription start site region 83666	1012 bp upstream
Tssr83667	transcription start site region 83667	1029 bp upstream
Tssr83668	transcription start site region 83668	1060 bp upstream
Tssr83669	transcription start site region 83669	1097 bp upstream