rs36563158 SNP Detail

Summary

• ID
  rs36563158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133987905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGGTGCT GACTGCTGAG
  TCTATAGGAG CATGTGCGCT TATGTGTGGT GGGGTTAGGG AACACACACG ATATTTTCGT
  TGTCGTATTC CAAGTTTACT GAAAATATTA CAGCACAACT GAAGATTCCA TCTAGTGTTT
  TGACCTTCAT CCCAGCTGAG AGACCAGCAG GCAGAACTAT CTGCTCAAAT CCAAAGCTTT
  Y
  GTGTGTCCTT ATGGTGACAG GATCTACCTC AGTGGTGGCC TGACTCGAGA CTCGGATCTC
  AGAAACAGCA CTACCTCTCC TTCCTCTCCA GCCCTCATCC CACCCCGCTG TCTGATGAAC
  TATGGCTCAT AGGCGTCTCT GAGCAGGCTT CATCAGATGC CACTCAAAGG TCCGATGCAG
  TGCTGGGAGT GAGGCTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51373652	NES14471777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs36563158					SNP	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373652	NES14471777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133987905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	751 bp proximal
Gm19497	predicted gene, 19497	within coordinates
Gm57140	predicted gene, 57140	881 bp upstream
Rr1740	regulatory region 1740	27 bp upstream
Rr12446	regulatory region 12446	105 bp distal
Tssr8846	transcription start site region 8846	905 bp upstream
Tssr8847	transcription start site region 8847	928 bp upstream
Tssr8848	transcription start site region 8848	969 bp upstream
Tssr13763	transcription start site region 13763	644 bp downstream
Tssr13764	transcription start site region 13764	695 bp downstream
Tssr13765	transcription start site region 13765	743 bp downstream