rs36563306 SNP Detail

Summary

• ID
  rs36563306
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17103691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATCAGT ACCTCTCTAG
  GACCTCCTAT GTGCAGGGCA GTTTGCAGCT CACATGATCT TCACACGCTG GGCACTGGGG
  AAGAAGGATA GACTAGGGGA GCAAGAACTC GAGGCTCAGG GTGTTTCTGT AATTGTCTTA
  GAATCATCTT AAATGAACAG AGTGAATGTT CTGGGTTTCT ATGCTTTCTG AAGCCAAAGA
  S
  CCTACCTTTC TTGTTGGCAT ACTGACATCC TGGCATGCAA CAGTTTGTAC AAGAAAACCC
  GATTTCCTGG TAGGACTGTC AGGAGACTCT CAGGAGGCTC AAAATTAGTG CACAACACTC
  CTACCCTAAT TGGCTGAGAA TTGTCCATCA GTTCTCAAAC CAGTGATGCT ACCACCATTC
  ACTCACCCAG TGTAGGGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50627352	NES13609079	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36563306					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50627352	NES13609079	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17103691 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Rr544799	regulatory region 544799	1748 bp distal
Tssr155419	transcription start site region 155419	657 bp downstream
Tssr158489	transcription start site region 158489	848 bp upstream
Tssr158490	transcription start site region 158490	785 bp upstream
Tssr158491	transcription start site region 158491	729 bp upstream