rs3656398 SNP Detail

Summary

• ID
  rs3656398
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127076013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTATCCT TTCTTCCTCC
  CACTGACTTC TTAGACCCTT GCTTCCATCT CAGAATCTAC ACAGTGGAGA TTGAGCAGAA
  CATGGGTTGA CAAACCTGCA TAAGTAGAAC TCGAATCAGC CGTCATTAAG TATAATCTCC
  CGTAAGAGAT CCACATGGTC ACCAGGAGAT CAGAAGTCAG AGGAGGCTGC CTGATCCACA
  S
  TCTTGGTGTG GAAACAGCAA AGCGCTTCCC TGTTCTGTTT AAGCCCCAGT TGTTGAGACT
  GTGCCCAGCA CATATGTGAT AGCCATTGAA TAGTGAGAAG ATCTGTGAGC TACACTGTTT
  TAAGGGTGCT TCCTCAATTT CTAAGTTTTT TTTTCCACAT AAGACCCTCA TTCTTGCAGC
  TGTTATTGGC CAGCAGGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5032300	WI_WGS_3_127763309	WI	MOUSE	f	SNP	G			C
ss135859275	ENSMUSSNP5083628	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		C
ss320952623	CHEV_3_126985282	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3656398					SNP	G	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127076013 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	1117 bp downstream
Rr65492	regulatory region 65492	1613 bp distal
Tssr35567	transcription start site region 35567	9 bp upstream
Tssr35568	transcription start site region 35568	3 bp downstream
Tssr35569	transcription start site region 35569	34 bp downstream
Tssr35570	transcription start site region 35570	81 bp downstream