rs36564444 SNP Detail

Summary

• ID
  rs36564444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34566640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTATAGG AGTTCCTGTC
  TCTTTGGTCT CCTCCCTCTC ATTACTCAGC AGGTGGGAAA GAACAGAGTG GAGATTAAGG
  CAGGGGAATG TGCAAGGTCT TCTGTATCCC CATCTCCCTC TGCAGTTTCT GAGTCCATTT
  CAGCAGAGGC TGGGAATCAG CAAAACCTGA ACTGGAATGC TATCCTAGAT TGCTTTAGAC
  Y
  ATCTGAATGA GAACAAGAGT CCAGGACATT ACAGCTGAAA AGACAGTTTA CAATTCACAG
  TTGCCGGGAG CAGGGGCACA TCATGAAGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTA GTCCCCAGGT CACTAGAAGG TAAAGGAAGG TAGGGTTTTC TGTGGAAAGG
  AGTAGGTGGG GTGAGCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51080083	NES14355279	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36564444					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51080083	NES14355279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34566640 () rs orientation: forward

Symbol	Name	Function Class
Rr275700	regulatory region 275700	361 bp proximal
Rr275701	regulatory region 275701	1161 bp proximal