rs3656449 SNP Detail

Summary

• ID
  rs3656449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127076037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCTTAG ACCCTTGCTT
  CCATCTCAGA ATCTACACAG TGGAGATTGA GCAGAACATG GGTTGACAAA CCTGCATAAG
  TAGAACTCGA ATCAGCCGTC ATTAAGTATA ATCTCCCGTA AGAGATCCAC ATGGTCACCA
  GGAGATCAGA AGTCAGAGGA GGCTGCCTGA TCCACACTCT TGGTGTGGAA ACAGCAAAGC
  R
  CTTCCCTGTT CTGTTTAAGC CCCAGTTGTT GAGACTGTGC CCAGCACATA TGTGATAGCC
  ATTGAATAGT GAGAAGATCT GTGAGCTACA CTGTTTTAAG GGTGCTTCCT CAATTTCTAA
  GTTTTTTTTT CCACATAAGA CCCTCATTCT TGCAGCTGTT ATTGGCCAGC AGGTCACTGG
  AAAGTGCGGA CTGAGTTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5032351	WI_WGS_3_127763333	WI	MOUSE	f	SNP	A			G
ss135859278	ENSMUSSNP445306	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss320952624	CHEV_3_126985306	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3656449					SNP	A	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127076037 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	1093 bp downstream
Rr65492	regulatory region 65492	1637 bp distal
Tssr35567	transcription start site region 35567	33 bp upstream
Tssr35568	transcription start site region 35568	4 bp upstream
Tssr35569	transcription start site region 35569	10 bp downstream
Tssr35570	transcription start site region 35570	57 bp downstream