rs36565254 SNP Detail

Summary

• ID
  rs36565254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41116438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA CAGAACGTTA CGCAGAACAC
  Y
  GACTGGGACT CCAGTTGTCA CTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50701303	NES14261008	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss136348405	ENSMUSSNP6451162	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss322923633	CHEV_9_41013225	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36565254					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50701303	NES14261008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41116438 () rs orientation: forward

Symbol	Name	Function Class
1700063D05Rik	RIKEN cDNA 1700063D05 gene	1013 bp upstream
Gm68881	predicted gene, 68881	309 bp downstream
Rr194790	regulatory region 194790	238 bp distal
Rr194791	regulatory region 194791	163 bp proximal
Rr383259	regulatory region 383259	1375 bp upstream
Tssr2832	transcription start site region 2832	1044 bp upstream
Tssr84492	transcription start site region 84492	1010 bp upstream