rs3656527 SNP Detail

Summary

• ID
  rs3656527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA AAGTAATGAA TAGGCACATG
  Y
  GTCAGAAGAA GCAAAATAGA CTTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5032429	WI_WGS_7_79913549	WI	MOUSE	f	SNP			C	T
ss46127977	mCV22978506	ABI	CRAMUS_MOUSE	f	SNP	T	C		T	C
ss145293403	ENSMUSSNP2025416	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss322314349	CHEV_7_97313783	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3656527					SNP	T	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814481 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67722	transcription start site region 67722	1178 bp downstream
Tssr67723	transcription start site region 67723	232 bp upstream
Tssr67724	transcription start site region 67724	779 bp upstream
Tssr67725	transcription start site region 67725	824 bp upstream
Tssr67726	transcription start site region 67726	837 bp upstream
Tssr67727	transcription start site region 67727	901 bp upstream