rs36566149 SNP Detail

Summary

• ID
  rs36566149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118012270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGCTGC TCTGTAGCAG
  CCTCGGCGTC TGGTAACTGC CCCTACCTTC CCTGAGCCTG GCATGCAGGC CTGAGACACC
  TGCTCTTTGC CAGGTCCTCA GGCTTGGCCC TAGCCATGGG GGCTTTCTGA GGAGCCAGAT
  TATTTGTCGG TTCTGTGAGA AAATATGGAC CCGGTTCCCA CGTACCCTCT GCAGAGGACC
  Y
  GGTCAAGGCT GGGTGAAGGT TCAGGGGTGT TGATACAATG CTTGATATGG GCACATCACA
  GCACAGTGTC TCCAGATTCC TCAGTGTCAT CGTGAGGTGT GGTGCTGTTA CAGACAATGG
  GTGGGTATAG AAGACAGGCA CAAAGCTCAT GGACCCTGCA GACTCCACCA AAGGGAAGTC
  TCTGGCTCAA AACCTCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51190919	NES13825923	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36566149					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51190919	NES13825923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118012270 () rs orientation: forward

Symbol	Name	Function Class
Gm30360	predicted gene, 30360	within coordinates
Gm37028	predicted gene, 37028	1286 bp downstream
Nos1	nitric oxide synthase 1, neuronal	Intron
Rr618744	regulatory region 618744	93 bp distal