rs36566255 SNP Detail

Summary

• ID
  rs36566255
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66593303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTGCTA CGTTTAATAC
  ATTACACCCT AAAGAGTGTT TTGTGAATAT TTCTGAAAAA TATTTGACCC TGGAACTCAT
  TAAAACATGA TACATTATGA AATCTCTTAG GGCCTCTGAT TTCACTCAGT CAATACAGAA
  ATTTATCCAA AAATAGGTTT AAGAGCTTGC TTTACTATGT ACTTAAAGTT CGAGTTCACT
  K
  GAAGTCTAAA CAGCAGATAT CTTGGTTACA AAACAGACCA GCTTTTAAAT TTGTATTCAT
  AATTTTTGGT CATAGTCTTG AGGGGTACCA GAACAACCAA AATTGGTCCT TGAAATATTT
  TTTAAAAGTA GACGATTGCA TGTTAATTTT ACTTGCGACC GTGATTTTTA ATATTTAGTC
  AATTCCAGCT ATTAGAATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss50450312	NES13440739	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36566255					SNP	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450312	NES13440739	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66593303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	843 bp distal
Cpgi10161	CpG island 10161	622 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	within coordinates
Rr405709	regulatory region 405709	1512 bp downstream
Rr539737	regulatory region 539737	1629 bp distal
Rr539738	regulatory region 539738	1820 bp distal
Rr539739	regulatory region 539739	1766 bp distal
Rr539740	regulatory region 539740	253 bp distal
Tssr151705	transcription start site region 151705	1628 bp downstream