rs36566488 SNP Detail

Summary

• ID
  rs36566488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44890645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGGGA GGGAGGGGGG
  AGTCGCGAGG TCAAGGTCAC CGTGCCCCCT CTCCGTCAGA ACCCGGAAAA CTGCCTCCTC
  GCTCCTCGGC TGCGCCTGCC TGAGGCCAGG CCTGAGAGTC AACCTCCCGC AACTCTTGAC
  GGCTGCTCTA TTGGGAAGGC GCCTAAGAGG CGGCAACCCG ACCCGGCTTC ATTTCCCGCC
  Y
  GCTAGGGACA GCCACCTCCT GTTCGGAGGA CTCAGGACAC CAGCTTGCTT TCCCTTCTGA
  GGCCATAGTT CCAGGGAAGG AGGTAAAGTG AGCACAGGGG GCGTTTCCGA GGAGGCTCCT
  AGGGACCTGT GACAGCCACG GGCTCAGTCC TGGGGTCGGA GGGTTCAGGA GTGGCTGGGG
  CTGGAGCTCA GTTAGAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51480350	NES13971406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36566488					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480350	NES13971406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44890645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19038	CpG island 19038	within coordinates
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	within coordinates
Tssr66503	transcription start site region 66503	115 bp downstream
Tssr66504	transcription start site region 66504	107 bp downstream
Tssr72356	transcription start site region 72356	1934 bp upstream
Tssr72357	transcription start site region 72357	1926 bp upstream
Tssr72358	transcription start site region 72358	1901 bp upstream
Tssr72359	transcription start site region 72359	1871 bp upstream
Tssr72360	transcription start site region 72360	1834 bp upstream
Tssr72361	transcription start site region 72361	1811 bp upstream