rs36567296 SNP Detail

Summary

• ID
  rs36567296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15895981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTAGCATG AGCAACACAG ACACATGGAG TGCCTGAGAG
  CAGCACTAAA GGATGAGCGA GCACACTAAT CTTACCCTCC AGGTCCCACC AGCTCCTGTA
  R
  CCACGGGCTC AAGCCAGCGC CTGTCAGTCT AGAATGAAGA GAGCAGGAGA GCACATGGTG
  GCGGGGGGGG GGGGGGCTGT CAAATGCAGA AGAAACAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51880832	NES14893710	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	A	G	A	G	G	A	G	A
ss148378232	ENSMUSSNP2921542	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36567296					SNP	A	A	A	A	A	G	A	G	A	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880832	NES14893710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15895981 () rs orientation: forward

Symbol	Name	Function Class
Rr155078	regulatory region 155078	381 bp distal
Rr160786	regulatory region 160786	20 bp proximal
Rr164335	regulatory region 164335	1037 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	993 bp downstream
Tssr64587	transcription start site region 64587	1862 bp downstream
Tssr64588	transcription start site region 64588	1846 bp downstream