rs36568062 SNP Detail

Summary

• ID
  rs36568062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58662920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTATTT AATTTTAGTT
  CTGGACATAG AGCCTGAGGC TGCTCATACT AAGCAAGTGC TCTATTGCAG AGACGCAGCG
  CCAACCAGGG ATAGGTCTCA ATTTTCCCTT GGTTATCGAT TTGATATGCC GATATCAGCC
  ACATGTTTAC ACTTTTGTTT CATTCATTTT TAGTGTGTTG TGGGAGCACA ATGCTCATGT
  R
  GGTATGCAAG TGTATGGAGT CTTCCTGGAT TGCTATACAT TCTATTTTTT TTGAAGCACC
  ATCTTTCTGA GTTCCAAGGA CCTGCCTGTC TCTGCCTCTC TAGTGCCACG ATTACAGGCA
  TTCATATTTT ACATGGGTGT TTGGGATCCT AATCTGAATC TTTGTGCTTT ACTGACTGAG
  CTATCTCCCC AGTTTCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904023	NES13492698	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs36568062					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904023	NES13492698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58662920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	1479 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	81 bp proximal
Tssr5571	transcription start site region 5571	1361 bp downstream
Tssr157266	transcription start site region 157266	1403 bp downstream
Tssr157267	transcription start site region 157267	1384 bp downstream
Tssr157268	transcription start site region 157268	1330 bp downstream
Tssr157269	transcription start site region 157269	737 bp downstream
Tssr157270	transcription start site region 157270	663 bp downstream
Tssr157271	transcription start site region 157271	568 bp upstream
Tssr157272	transcription start site region 157272	579 bp upstream
Tssr157273	transcription start site region 157273	1710 bp upstream
Tssr157274	transcription start site region 157274	1742 bp upstream
Tssr157275	transcription start site region 157275	1762 bp upstream
Tssr157276	transcription start site region 157276	1785 bp upstream
Tssr159959	transcription start site region 159959	1351 bp upstream
Tssr159960	transcription start site region 159960	1303 bp upstream
Tssr159961	transcription start site region 159961	660 bp downstream