rs3656847 SNP Detail

Summary

• ID
  rs3656847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37694000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCT GAAATCCTGC TCCGGGTTTT
  Y
  GTGCAGCCCG CGTGATTGAC ACATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5032750	WI_WGS_3_37524973	WI	MOUSE	f	SNP	T			C
ss134809978	ENSMUSSNP6659070	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss320711450	CHEV_3_37538773	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3656847					SNP	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37694000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	within coordinates
Gm42922	predicted gene 42922	254 bp downstream
Rr575523	regulatory region 575523	within coordinates
Rr575524	regulatory region 575524	240 bp proximal
Rr575525	regulatory region 575525	925 bp proximal
Rr575526	regulatory region 575526	1033 bp proximal
Spry1	sprouty RTK signaling antagonist 1	96 bp upstream
Tssr28908	transcription start site region 28908	158 bp downstream
Tssr28909	transcription start site region 28909	54 bp upstream
Tssr28910	transcription start site region 28910	77 bp upstream
Tssr28911	transcription start site region 28911	94 bp upstream
Tssr28912	transcription start site region 28912	134 bp upstream