rs36569287 SNP Detail

Summary

• ID
  rs36569287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60657457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAGGAGG GAGCGCTCAC
  AGCCTCTAAC CTACACTAGT TCCTCCGCAG AATGCTAACT CATATTTTGT GGCTGACCAA
  ATGGGTTCCC AGAAGTATTC CCAAAATCTA TTCACATATC AGCTATGTAG TTAATAAGGT
  TAGTGGCGAC CTGGGACTGA CACCAGTGCT GTCATTGGAA CACAGATCTC TAAAGTTAAC
  Y
  CCAATTTTCA GACTCTGGAA GCTATAGTGC TATAGTACTG GAGTTAACAA GAACAGGGTC
  CAGACCCCTG GGGAGATTCG ACAGAAACCT ATCAAGAAAT TTATCAAGGT GTGTTGATTC
  TCTGCCATGA GGGGCTGTCC TTATTCCATA GCACAATGAC CTCATAATGC CCGGTGTTCT
  GTTTAGCAGT GCTAACAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418838	NES13463077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36569287					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418838	NES13463077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60657457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	1518 bp proximal
Dctn4	dynactin 4	1800 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr346411	regulatory region 346411	857 bp distal
Rr352957	regulatory region 352957	943 bp proximal
Tssr151313	transcription start site region 151313	1809 bp upstream
Tssr153448	transcription start site region 153448	1591 bp downstream
Tssr153449	transcription start site region 153449	1658 bp downstream
Tssr153450	transcription start site region 153450	1701 bp downstream