rs36569329 SNP Detail

Summary

• ID
  rs36569329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61926921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAACCCAA AGTCTGATGT
  CGGGGGAAAA GCTGCCTTTA AAGAGAGCAC AGATCTAGGT ATGCAAAGCG GAGCCATCTC
  GGCTCTCTCC TCCCTCTCCT GGCTCTTCCT TGTGTCCGTA GTCTCTACTT TCAGGTGATC
  TGTCTCTGTG GCAAACGAAG GAGGCTAGCA AGCTTCCCTG ATAGCTGGAG AATCCAGACA
  Y
  TAGCCTGTCT CCCTGCAGTT CCAGAAGTAG CCTAGAGGGG GCACTCATAG CCTGGGGAAA
  CAATGATTTG AACCTGCCAG AGACAGGAGC TAGAGTGATG TTTAGCTCAT TTCAACTAGG
  CAACTCATTG GTCACTAGGT TTACATGACA CATCATTTGT CACTTACGTG CACACTTGTC
  CCTGCTGGCC TTTGATGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50425670	NES13465437	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	C		T
ss325645774	CHEV_18_61953504	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36569329					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50425670	NES13465437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61926921 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	1003 bp downstream
Rr346544	regulatory region 346544	721 bp distal
Rr346545	regulatory region 346545	within coordinates
Rr351728	regulatory region 351728	776 bp distal
Rr354902	regulatory region 354902	1521 bp distal
Rr356351	regulatory region 356351	within coordinates