rs3656951 SNP Detail

Summary

• ID
  rs3656951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171076108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG CCAGCACCCC CCTCCCCACG
  Y
  GCTGTAGCTG CCACTCTGTG GCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5032854	WI_WGS_1_172527100	WI	MOUSE	f	SNP	C			T
ss45122409	mCV23616706	ABI	CRAMUS_MOUSE	f	SNP		C	C	T	C
ss119996786	PARCsnp_1.12470	PARC_SEQ	INBRED	f	SNP				T	C
ss119998536	PARCsnp_1.01536	PARC_SEQ	INBRED	f	SNP				T	C
ss146158266	ENSMUSSNP3914206	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320117553	CHEV_1_173178670	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3656951					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171076108 () rs orientation: forward

Symbol	Name	Function Class
Adamts4	ADAM metallopeptidase with thrombospondin type 1 motif 4	1882 bp upstream
Cpgi1016	CpG island 1016	1019 bp distal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	92 bp downstream
Rr423259	regulatory region 423259	927 bp distal
Rr423260	regulatory region 423260	1379 bp distal
Rr423261	regulatory region 423261	852 bp distal
Rr423262	regulatory region 423262	74 bp proximal
Rr423263	regulatory region 423263	1290 bp proximal
Rr423264	regulatory region 423264	1570 bp proximal
Rr423265	regulatory region 423265	1895 bp proximal
Tssr10000	transcription start site region 10000	1162 bp downstream
Tssr10001	transcription start site region 10001	1877 bp upstream
Tssr15023	transcription start site region 15023	1418 bp upstream