rs36569725 SNP Detail

Summary

• ID
  rs36569725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38353277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGCACT TGGATTACAG
  AGGTGAACCA CTACACTATG TCTTTATGTG GGCACTGGAG ATCCAAACTT GGGTCCTTAT
  TCTGTGGGCC AAGGGCTTTA ACAACTGAGC CATTTCCCCA GCCCCAAACA TTTGTTTTGA
  CGAATATTCA TAAATCTAGT GATCAAAATG AAAAAGCTAA GAACACTTAA ATTGATTAAA
  W
  GTTACTGTTA TCTGTAGTGG AAACATGGAA ATTTCTTTCT TGTTTGGTTG GGGTTGTTTG
  TTTTGTTTGT TTTGAGATAC GCTTTCACTG TGTAGCCCTG GCTGTCCTCT GTAGACCATG
  CTGGCCTCAA ACTCACAGAG ATCATCTGCC TCTACCTTCT GGGTGCTGGG ATTAAAGGTG
  TGCTCCACCA CTGCCCTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
ss51288139	NES13774284	PERLEGEN	MM_PANEL2	f	SNP		A	T		T
ss133127193	ENSMUSSNP338615	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	PWD/PhJ
rs36569725					SNP	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288139	NES13774284	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38353277 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	779 bp proximal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	465 bp upstream
Rr144024	regulatory region 144024	1630 bp distal
Rr146156	regulatory region 146156	323 bp proximal
Tssr55644	transcription start site region 55644	392 bp upstream