rs3656989 SNP Detail

Summary

• ID
  rs3656989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66372092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG TCAGTGACCT GTTCAACAAG
  R
  CTGGTTTTGA CCTCAGCCAT TGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5032892	WI_WGS_5_65282036	WI	MOUSE	f	SNP						G	A
ss45789404	mCV22883478	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss61174720	NES16683992	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	G	G		G	G	A	G		G
ss148586915	ENSMUSSNP5612542	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321563113	CHEV_5_66605988	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3656989					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174720	NES16683992	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66372092 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	within coordinates
Gm73278	predicted gene, 73278	within coordinates
Gm73415	predicted gene, 73415	204 bp upstream
Rr378070	regulatory region 378070	within coordinates
Rr612424	regulatory region 612424	854 bp proximal
Tssr46528	transcription start site region 46528	1010 bp upstream
Tssr51198	transcription start site region 51198	204 bp upstream