rs36570653 SNP Detail

Summary

• ID
  rs36570653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAAAAC GGATGTGGGC
  TCCTTCCTGA CCCAGGGAAC CACAGAGGTT TGTCACGAAA GATAGTCTGT CAAGTTGCAA
  GATCAAATTC AGTGATTATT CTTTGGTTGT AACACTCCCA TGACTCCCAA TGCCCTCTGA
  AAAATATCAA AGACGACTAG CCAGGCGCCC ATCCATTCAG TCAATAAACC TGTCATAACT
  Y
  CACAAGAGCC TGTATCTGTG CTGGCCATGT GGAGGACAAA GCAGGAGCCA ACGGTGACTT
  GTCTGCCATG TAGTAGACAA CTCAGCGAAA TGCTGAAGAG GCATACAGGC CAGTGAGGGG
  TGAAACCGAT GTCAGGCCAG AGCTGAAGAC TAGGGATTCA GAGGGGCAAT GAGTCCAGAG
  GGAGACAAAG ACACTGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51887438	NES14907472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36570653					SNP	C	C	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887438	NES14907472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837623 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	278 bp distal
Rr644171	regulatory region 644171	365 bp distal
Tssr2159	transcription start site region 2159	1944 bp upstream
Tssr65386	transcription start site region 65386	1087 bp downstream
Tssr65387	transcription start site region 65387	754 bp downstream
Tssr65388	transcription start site region 65388	656 bp downstream
Tssr65389	transcription start site region 65389	602 bp downstream
Tssr65390	transcription start site region 65390	1524 bp upstream
Tssr65391	transcription start site region 65391	1555 bp upstream
Tssr65392	transcription start site region 65392	1577 bp upstream
Tssr65393	transcription start site region 65393	1715 bp upstream
Tssr65394	transcription start site region 65394	1764 bp upstream
Tssr65395	transcription start site region 65395	1879 bp upstream
Tssr65396	transcription start site region 65396	1966 bp upstream
Tssr65397	transcription start site region 65397	1971 bp upstream
Tssr65398	transcription start site region 65398	1985 bp upstream
Tssr65399	transcription start site region 65399	1997 bp upstream
Tssr71448	transcription start site region 71448	1091 bp upstream
Tssr71449	transcription start site region 71449	1078 bp upstream
Tssr71450	transcription start site region 71450	1066 bp upstream
Tssr71451	transcription start site region 71451	659 bp upstream
Tssr71452	transcription start site region 71452	1568 bp downstream
Tssr71453	transcription start site region 71453	1591 bp downstream
Tssr71454	transcription start site region 71454	1618 bp downstream
Tssr71455	transcription start site region 71455	1929 bp downstream
Tssr71456	transcription start site region 71456	1983 bp downstream