rs3657136 SNP Detail

Summary

• ID
  rs3657136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86701980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CAACTCTCAC CAAGGCAAAA
  R
  CAAAGATCCA AGATACTCCT GAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5033040	WI_WGS_11_87476082	WI	MOUSE	f	SNP							A	G
ss37229643	NES08590349	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A		A	A	G	A	G	G	G	A	G
ss38830936	mCV23210340	ABI	CRAMUS_MOUSE	f	SNP	A	G	A							A
ss132508700	ENSMUSSNP941241	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3657136					SNP	A	G	A	A	G	A	A	G	A	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37229643	NES08590349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86701980 () rs orientation: forward

Symbol	Name	Function Class
A130040M12Rik	RIKEN cDNA A130040M12 gene	674 bp downstream
Rr402834	regulatory region 402834	733 bp upstream
Rr453657	regulatory region 453657	within coordinates
Rr453658	regulatory region 453658	550 bp proximal