rs36573021 SNP Detail

Summary

• ID
  rs36573021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATACAT AGCACAAAAC
  CTTATCATCT CAACCACCTT TAAATGTAAA GTCAGGGCAG CTAAAGTCAG GGACAGCAAG
  TGTACTGTGC GCCCATCGCT ACCATCCACA TCCACCTTAC GGCAACTCTC CCCTCCCCTT
  GAATTCTCTT TCTACCCAAT TATGACATCT TCTAGCTCCT TCATTATGAG GGCAGTACAC
  R
  CTCTCACTCT CGTGTTCATC TCCTTTTGAG AGACATTTTC TCTCTTTCTG AAAACATAAA
  ACTGTTTAAT AGTTCCAAAT GTAGAAAGGA CCACATAAAC CATCTAAAGA ATGTTTTAGA
  TGATTATTAG CCTGAGAGAC CTTGAAACAA AATGACTTAT TTTAAAACCA GGCCAAATTG
  ATGACTAAGT ATCTGCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674840	NES14008181	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36573021					SNP	G	G	G	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674840	NES14008181	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	895 bp proximal
Gm10177	predicted gene 10177	1096 bp downstream
Gm48081	predicted gene, 48081	1221 bp upstream
Gm65989	predicted gene, 65989	912 bp downstream
Rr676656	regulatory region 676656	397 bp proximal
Rr676657	regulatory region 676657	1127 bp proximal
Rr676658	regulatory region 676658	1232 bp proximal
Rr676659	regulatory region 676659	1451 bp proximal
Rr676660	regulatory region 676660	1759 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1080 bp downstream
Tssr88822	transcription start site region 88822	1104 bp downstream
Tssr88823	transcription start site region 88823	1126 bp downstream
Tssr88824	transcription start site region 88824	1152 bp downstream
Tssr88825	transcription start site region 88825	1167 bp downstream
Tssr88826	transcription start site region 88826	1253 bp downstream
Tssr88827	transcription start site region 88827	1346 bp downstream
Tssr88828	transcription start site region 88828	1369 bp downstream
Tssr88829	transcription start site region 88829	1392 bp downstream
Tssr88830	transcription start site region 88830	1408 bp downstream
Tssr88831	transcription start site region 88831	1453 bp downstream