rs36573900 SNP Detail

Summary

• ID
  rs36573900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131015517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCGACT CCAGTCCGGT
  TCCTCTCATT AGGAAGGCCT TGCCTCTTTT AGCCCTTTGA TCCTCCCGTG TGAAGGACTG
  ACAGGTTGCT CAGTTCATAA CAAAGATCTG CAACCAAACA GTGTGTTCTG TTTAGTAGGA
  AAAGGTTAGC TTTGCACAGT AGGAATTTTA AATCTTTGGA GACTTCACAA TTCTAGCATT
  K
  CAATGGTTTC TTCCCGGTTT TCTCAGTTTG TTTTATTTCT CCGTAGCAAC TCAGTGGATA
  TAGTTGCTTC ACAGTTTGGA TCAGGTGTTT GTGGGTGGGG CTAGCTGTGG AGGGAGCATC
  AGTCGTCTGT GTCATTCTCC ACGAGCCCTC TTCTAGTTCG CACCAAAATC CTACGGAAGG
  CGCTTGGCCA CCCACTTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51634229	NES14648964	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36573900					SNP	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634229	NES14648964	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131015517 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Tssr31723	transcription start site region 31723	923 bp upstream
Tssr31724	transcription start site region 31724	1960 bp upstream