rs36573902 SNP Detail

Summary

• ID
  rs36573902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25778067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGCAGG AGACACTAGG
  AACCTTAATG GCGATCTGAC AGTCACCTGT TGAATGTAGC CATAACAAAG GAGGATGAGG
  CTTGACTCTG TGCTTTTGTG GTTTTCTAGT CAGATATCCT GATTGGATTT TAGAATGTCT
  ATGGCAGTTG GACCATGTAA AATGCCCTGG ACTGAAAAGC CTTATTGTGG GAGTTTGTAA
  Y
  AGACTGCCAG TAGAAAGGAA ACAGATGTTG CCCCAAAAGG CAGGCCCTGA CCTTTTTTTC
  CTATTCTTTT CCTCTGACAC TTGTCCCCCT TGTGGACAGG TCTTCCTTCG AGAATCCTTG
  GAGCAGAAAC TGGAAAAGAG GCGGGAAGAG GAGATTGACC GTGCGGCCAT GGTGATCCGA
  GCTCACATCT TAGGCTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51610555	NES14603635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36573902					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51610555	NES14603635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25778067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6971	CpG island 6971	1893 bp proximal
Myo10	myosin X	within coordinates
Tssr130835	transcription start site region 130835	1584 bp downstream
Tssr130836	transcription start site region 130836	138 bp upstream