rs36574167 SNP Detail

Summary

• ID
  rs36574167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143949745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGTACT GGAATTAAAG
  GTATGCACCC ACATAACTGG TCGTGGTTAT ACGTCTTATA AATACCAAAT ACCTGATAAT
  TCCAGAATTT ATATTCCAGA TTAATTTGTA TTTCGTAGGT TATCAGTTAG TAATACTAGG
  GAATAAATTG TTACTAACAA ACCTTGAGTG AACATCCTGC CCTAGCCTTT TGTGTGATGT
  R
  AGCCTTATAA AGCATCTTCC AGTCTCACTG CTGTGAGGAG AGCTTGCCCC AGCTACAACT
  GCCAGGTTAT TCAGTGTGCT CTACATACTG TGTGGGGGAC ATGTGTATAA TGAATTTTCC
  TCCCGTTTGT TTTCTTCAGA ACATATATTG ACTATGAAAA TAGCAAGCCC CAGAGCAGAG
  GAGATGACTC AGTGATTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51654908	NES14642972	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36574167					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51654908	NES14642972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143949745 () rs orientation: forward

Symbol	Name	Function Class
Rr398097	regulatory region 398097	1578 bp downstream
Rr586608	regulatory region 586608	1503 bp distal
Rr586610	regulatory region 586610	1741 bp distal