rs36574191 SNP Detail

Summary

• ID
  rs36574191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19526257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGATGAT ATCCACCAGA
  TACATCCATT TGTCTAAGAA TTTCATAAAT TCATTGTTTT TAATAGCTGA GTAGTACCAT
  ATTGTATAAA CGTACCACAT TTTCTGTATC CATTCCTCTA TTGAGGGACA TCTGGGTTCT
  TTTCAGCTTC TGGCTATTAT AAATAAAGCT GCTATGTCTC CTCTTTATGT AATAGCTTGA
  R
  ACCATTTCTA TAAACTTTTG CCAGCCAGTT TCTCAATCAC AAAGTTGTGG AGTAGTTCTA
  GAGTACTTTC TGTGTGCAAG GCATGCCACT GTGATGTTCA TTGTTTCCTC ATTTTGGAGG
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTACTA CAGAATAATG ATGAAAAGCC
  AAGAGGCCAC AGCAGAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794135	NES14546367	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36574191					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794135	NES14546367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19526257 () rs orientation: forward

Symbol	Name	Function Class
Lamp3	lysosomal-associated membrane protein 3	1142 bp upstream
Rr391425	regulatory region 391425	590 bp downstream
Tssr140331	transcription start site region 140331	1210 bp upstream
Tssr140332	transcription start site region 140332	1174 bp upstream
Tssr140333	transcription start site region 140333	1155 bp upstream
Tssr140334	transcription start site region 140334	1108 bp upstream
Tssr140335	transcription start site region 140335	969 bp downstream