rs36575242 SNP Detail

Summary

• ID
  rs36575242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131002726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGAGCC GCGGTTCTCA
  ACCTGTGGGT CACGGCCCCT TTGGCAAACC TCTGTCTCCA AAAATATTTA CGCTACCATT
  CACAACAGGA GCAAAACTAC AGTTAGGAAG TAGCGGTGGA AATAATTTTA TGGGTGGGGG
  TCACCACAGT GTGAGGGAAC TGTATTCAAG GGCCACAGCA TCAGCAAGGT TGAGAAGCAC
  Y
  GCTCTAAAGA GAGGTGAAAT CACCCCAGCC GTCTTTCAGT CCTGAGAGGG CAATGCCCAG
  TCTGTGTACC CACCAAGGCC TGGGCAGGGT GCGGGCAGAG GCTCTGCCTC CAGGGAAACC
  TCATAGGTAT CTTACAGTCA TACATTCAGG GGCTTCACAC TCCAGTTCAC ACCCAGCCTG
  CTCAGTGGTA CCCACCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634427	NES14649189	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36575242					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634427	NES14649189	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131002726 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	Intron
Rr367559	regulatory region 367559	130 bp downstream
Rr585291	regulatory region 585291	862 bp distal
Rr585292	regulatory region 585292	918 bp distal
Rr585293	regulatory region 585293	within coordinates