rs36575428 SNP Detail

Summary

• ID
  rs36575428
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3375395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGA CAAAGCGGAT CGGTGACTCC
  S
  GGATGGCAGC GGCGACGCGT CGCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50590236	NES13652882	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G		G	G	C	G		C
ss325715001	CHEV_19_3325395	CHEVERUD	SCREENING_POP	f	SNP									C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36575428					SNP	G	G	G	C	G	G	G	G	C	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50590236	NES13652882	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3375395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10364	CpG island 10364	1158 bp distal
Cpgi10365	CpG island 10365	within coordinates
Cpt1a	carnitine palmitoyltransferase 1a, liver	within coordinates
Gm58963	predicted gene, 58963	1647 bp upstream
Rr394044	regulatory region 394044	within coordinates
Rr542381	regulatory region 542381	1881 bp distal
Tssr154178	transcription start site region 154178	291 bp upstream
Tssr157384	transcription start site region 157384	1674 bp upstream