rs36576095 SNP Detail

Summary

• ID
  rs36576095
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24216180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAACAAT TAAAAGACTT
  GAGGTCATAT CGTATCAGAA TTTCCCATGG CGAGTTAGAG AGCTGACTTG CAATGAATAG
  CATCAATGGT GCTCTGGGAG AGTCACCCTC TCATCTAGAG AATAACGATG TGTAGTCTAA
  CTTCACGAGT GGTTGTGAGA CTCATATGCT ACTAAGCTGT AGGCATGGAC AAGAGAGGGG
  W
  GCACACAATG ACTTGTTATC AGGATAAGGT TGCCAGCGGA TGAGTTTGGC ATGAGATCTT
  TTATCTTTGC CAATCTCATT TGATTTCCCC CAGGAACTGC TGTTAAGGAA CAACTTTGGT
  CCCATTTTAC AGATAAGGTA GTTAACTACT GGGAGGCTAA TTATATTGCT CAAGTTCACA
  TAACTGCTAA AGCAGAAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50928121	NES13475668	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36576095					SNP	T	A	T	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50928121	NES13475668	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24216180 () rs orientation: forward

Symbol	Name	Function Class
Col9a1	collagen, type IX, alpha 1	511 bp upstream
Rr408587	regulatory region 408587	1779 bp distal
Tssr21	transcription start site region 21	554 bp upstream
Tssr6103	transcription start site region 6103	590 bp upstream