rs36576394 SNP Detail

Summary

• ID
  rs36576394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54568496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTAGAC AGCCCAGCTG
  TTTAGCACAC TGCTCTCTCT GAGCCCTATC TTCCACTCTT CTGTTCTTGC TCTCTTATGG
  GACACAAATG CAGTTCCTCC ATATCAGAGA TAACCTCAAT CTCTGTTCAG GTACGGACAG
  AGAGGGCCAG AGACTTTCCA AGGTCATAGC AGGCTGGAAT GGAAACCATG GGTGCTCCCT
  Y
  GAACTTTTCG GTCATTGCCT GCCCGCTCCT ACCATATACC AGGTCACCTC CAACCATGGG
  GAGACAAAGG AACGTGCTTG CTGACTGAAA AAAAAGTCTT TCTTAATACC AATGTGACTT
  GTACCTCAGT TGAATCTCTA ACGGCCAACA GAGGAACAGA CACACTGAAT CACACTCCGA
  AGGATAAATG TCCCTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52018246	NES15041876	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36576394					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018246	NES15041876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54568496 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	within coordinates
Tssr89653	transcription start site region 89653	454 bp downstream
Tssr89654	transcription start site region 89654	632 bp downstream
Tssr89655	transcription start site region 89655	672 bp downstream