rs36576481 SNP Detail

Summary

• ID
  rs36576481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:40988806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAATAAG GAGACTTTGC
  AGGTCATGGT TTCCTGTGAT AGATAGGGTG AGTTATCATG ATTAAGATGT CATCATCTCT
  AATATCAAGT TTGCGTGTAT GTATGTGTGT GTGTGTTTGT GTGTGTGTAT ACACTGGCCC
  AGTGTTGTGA CTTTTAAAGT GAAAATTTTA ATATATGGCT GGCATAAATA TTTATAGTAT
  R
  AAAGTGAAAA GTCCCAAAGA ACATAAGTCT TAAGGATTAT AATTTAATAA TAATAATAAA
  AGATCAGCCT GTACAAAGCC TTAAGTGGCT TTAGAGGCAA GGTTATTCCA AATGTCAGAC
  ACATGAAAAA AAAAAAAACT CAATTACAAT CACACTAAGA AGAAGGAAGA CTCCCCATTA
  AAGAAAGGCA GGGCTCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50828946	NES13537315	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36576481					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828946	NES13537315	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:40988806 () rs orientation: forward

Symbol	Name	Function Class
Gm59161	predicted gene, 59161	within coordinates
Rr547535	regulatory region 547535	1071 bp distal
Rr547536	regulatory region 547536	336 bp distal
Rr547537	regulatory region 547537	554 bp distal
Tssr159239	transcription start site region 159239	123 bp downstream