rs3657684 SNP Detail

Summary

• ID
  rs3657684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100943970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC CGAATGACTG AGTGGTGCTA
  Y
  GCGCGGGCAC GCGGCCTTGC AAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5033590	WI_WGS_15_102002777	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3657684					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100943970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	within coordinates
Rr509881	regulatory region 509881	738 bp proximal
Rr509882	regulatory region 509882	1298 bp proximal
Scn8a	sodium channel, voltage-gated, type VIII, alpha	151 bp downstream
Tmdd1	transmembrane and death domain 1	253 bp downstream
Tssr136507	transcription start site region 136507	1273 bp downstream
Tssr136508	transcription start site region 136508	1291 bp downstream
Tssr136509	transcription start site region 136509	1312 bp downstream
Tssr136510	transcription start site region 136510	1331 bp downstream