rs36577195 SNP Detail

Summary

• ID
  rs36577195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127542987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCATTGGT CAGCAGACTG GAAGGAGCTG TGCCCTCAGG
  TCTTTCCTCC TCTGGGCTCC AACTCTTGGG AGCTTCGGCC CCTCACTTTC TCTTTCTTCC
  Y
  GTCCACAGCA TTTGGCAATG CCAAGACCAT CCGCAATAAC AACTCCTCTC GATTTGTGAG
  TGAACACATC TGCCCCGGAG GAGTATGGGG CGGGTGTGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947123	NES14150400	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36577195					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947123	NES14150400	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127542987 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	within coordinates
Rr213603	regulatory region 213603	1987 bp distal
Rr213604	regulatory region 213604	614 bp proximal
Rr221966	regulatory region 221966	230 bp distal
Rr226492	regulatory region 226492	215 bp proximal
Tssr3395	transcription start site region 3395	1827 bp downstream
Tssr96246	transcription start site region 96246	312 bp downstream
Tssr96247	transcription start site region 96247	279 bp downstream