rs3657730 SNP Detail

Summary

• ID
  rs3657730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127076236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTCCCTG TTCTGTTTAA
  GCCCCAGTTG TTGAGACTGT GCCCAGCACA TATGTGATAG CCATTGAATA GTGAGAAGAT
  CTGTGAGCTA CACTGTTTTA AGGGTGCTTC CTCAATTTCT AAGTTTTTTT TTCCACATAA
  GACCCTCATT CTTGCAGCTG TTATTGGCCA GCAGGTCACT GGAAAGTGCG GACTGAGTTA
  R
  TTTCACGAAG GCCCCAGGAA AGGGTAGGGC CATGACCCAC CCTTTATCCT GAAATGGAGC
  CTCTTCCTTC TTCATTATTC TAGCTCTGCT CTGGAGTCTG AGTCACCTCG TTTCATTTAT
  GAATACTCTC ACTTCCTGGT GTTGGGGCAA ATTATAGTAA ATAACCTACT TTGAACATAA
  TAACATTTCT GAAAACATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5033637	WI_WGS_3_127763532	WI	MOUSE	f	SNP	A		G
ss135859287	ENSMUSSNP5894339	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss320952627	CHEV_3_126985505	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3657730					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127076236 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	894 bp downstream
Rr65492	regulatory region 65492	1836 bp distal
Tssr35567	transcription start site region 35567	232 bp upstream
Tssr35568	transcription start site region 35568	203 bp upstream
Tssr35569	transcription start site region 35569	186 bp upstream
Tssr35570	transcription start site region 35570	112 bp upstream