rs3657805 SNP Detail

Summary

• ID
  rs3657805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69715820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTTTGGGC TCCTGGGGCT TCACAGCACG GGAGCTGCAG
  GGAAGTCTAC CTAACCCGAA ACTCCCCAGC GGTGCAGGGT GGGGGTGGGG TGGAGGGTCG
  R
  GGACAGACTA TTTAGGACTC AGCGAGGGGA TCCCACGAGC CTCGCGGGGA TCGCCGCCCG
  TGGAACCCAG ACGCTCCAGG AAAGCACTCG TATGCCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5033713	WI_WGS_2_70663572	WI	MOUSE	f	SNP	A	G
ss320332412	CHEV_2_69723533	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3657805					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69715820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	within coordinates
Mettl5	methyltransferase 5, N6-adenosine	within coordinates
Mettl5os	methyltransferase 5, opposite strand	206 bp upstream
Rr44276	regulatory region 44276	1220 bp distal
Rr44277	regulatory region 44277	1381 bp proximal
Rr56967	regulatory region 56967	within coordinates
Rr397023	regulatory region 397023	291 bp downstream
Tssr24451	transcription start site region 24451	81 bp downstream