rs36578297 SNP Detail

Summary

• ID
  rs36578297
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACAAAT TGGTTGTTTT
  TGCTGGGTTT CTGCTGCCAC ATTGAATGCT TCCTGTATTC ACCTGCTTGC TTTGTTGGTT
  GATTGCTTTC CGGTGGTTAC TAGTCTATCA GGGGAAACTC CTTTTCCCTG AATGAAAGGA
  CCGAGCCGCT GAGTGTGTCA CAGAGAGGAG GAGAAATGCG GAGAAGGGAA ACAGAAGTGG
  K
  AATAAAGAAG CCGGAGGTTG CTTTTGGTTT CATAATAGGT TTGTATGAGT GAGTTGTTGG
  CTTACTGCAA ATATTCTCAT ATAGTTCCCA GCGGATTTGA AAATGAATCA TCAATTTCTG
  GTCCTCTTTC TCTATATCCT TTACCTGTTT ACTGTTTACG GTTCCAGCTA TTAAGATCAT
  TTGGTTGTAT GTGAGCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50753223	NES13566148	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G	G	G	G		G	G	G	G		G
ss325789624	CHEV_19_29327534	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36578297					SNP	T	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753223	NES13566148	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	589 bp distal
Gm41829	predicted gene, 41829	719 bp upstream
Gm59364	predicted gene, 59364	1543 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	802 bp upstream
Tssr155780	transcription start site region 155780	1379 bp downstream
Tssr155781	transcription start site region 155781	1190 bp downstream
Tssr155782	transcription start site region 155782	1177 bp downstream
Tssr155783	transcription start site region 155783	1143 bp downstream
Tssr155784	transcription start site region 155784	731 bp downstream
Tssr155785	transcription start site region 155785	602 bp downstream
Tssr155786	transcription start site region 155786	559 bp downstream
Tssr155787	transcription start site region 155787	454 bp downstream
Tssr158749	transcription start site region 158749	939 bp upstream