rs36579101 SNP Detail

Summary

• ID
  rs36579101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40286156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTCAGCG GTCAGTCCCC
  GGTTGTCACC AGCTCAGGAG CTTGCAGTTA TTATGAGCTA ATCTTGCAGA ACTCAGATCC
  GCTCTCTCCG TCCTTCTCAA GGCCCTCTAA AGAATGCTTG CAGCAGGAGA GCTACACTTT
  GCTGGGGTTG GGTAGAAAAC CAGTAGTGAC CTGCAGCCAG GCTAAGACTC ATTGGTTAAC
  R
  TGCTTGAGCC TATGCCTAAA CCTGCCACCC ACAGGAATGG ACTCCCCTAC CCCCAGCCAG
  CTTGGACAGC AGGTACTCAA TGAAGGTAGG CTGCATTCCT GCAGAGCGCT TCCCCAAGCT
  CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC CTCCTCCTCC TCCTCCTCCT CCTCCTCCCT
  CCACCCTCTT CAAGGAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677883	NES13999649	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36579101					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677883	NES13999649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40286156 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	1091 bp proximal
Rr676806	regulatory region 676806	1397 bp proximal
Rr676807	regulatory region 676807	1448 bp proximal
Rr676808	regulatory region 676808	1551 bp proximal
Tssr88904	transcription start site region 88904	1261 bp downstream
Tssr88905	transcription start site region 88905	1353 bp downstream
Tssr88906	transcription start site region 88906	1472 bp downstream
Tssr88907	transcription start site region 88907	1499 bp downstream
Tssr88908	transcription start site region 88908	1566 bp downstream
Tssr88909	transcription start site region 88909	1970 bp downstream