rs36579534 SNP Detail

Summary

• ID
  rs36579534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127727144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATATCTG TCTATCAGAG
  CAATAGGGAC TAAGGGACTC TGAACTATCT TAGCAGCCAA GAGGTCCTCA AAATCCTTGA
  GTGGCCAGCA CCCTACAAAG TGAACACTGG GACTTTCTAA ACAAAGGGAG ATTGTGGATA
  TATTTTTCTG CAGTGAACCC ACGTCCCTTC AACGATTCGT CCACTTACTG TCAAAAGCCA
  Y
  TCCTCATACA TACTGCATCT CTCTTACTTT TTCTGACCAC AGTCTGCACT CTTGTTGGTG
  TTGGGGCTTC AAGAACTCTG TACGATTAAG GAGTCCATAG AATTTCCGGG TAAAGTCAGA
  GAGAATAGGA AAGTAGATGT GACTCTGTTG CAGGAGACAC AGGACTAAAA AAAAAGCCTC
  AGAGACAACT CCCTGATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss50945979	NES14148059	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	C
ss323530344	CHEV_10_127328331	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs36579534					SNP	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50945979	NES14148059	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127727144 () rs orientation: forward

Symbol	Name	Function Class
Rr226507	regulatory region 226507	1944 bp distal
Rr226508	regulatory region 226508	within coordinates
Rr385469	regulatory region 385469	507 bp upstream