rs3658004 SNP Detail

Summary

• ID
  rs3658004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33202754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA GTGCATTATA ATTTTATAAG
  R
  CTTAATGATT AAAAACAATT TCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5033912	WI_WGS_12_27260951	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3658004					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33202754 () rs orientation: forward

Symbol	Name	Function Class
Atxn7l1	ataxin 7-like 1	within coordinates
Rr260247	regulatory region 260247	954 bp distal
Rr260248	regulatory region 260248	154 bp distal
Rr267129	regulatory region 267129	47 bp proximal