rs36580256 SNP Detail

Summary

• ID
  rs36580256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGCTCT GAAGAACTTT
  GCCAAATACT TTCTCCACCA ATCTCATGAG GAGAGGGAGC ATGCCGAGAA ACTGATGAAG
  CTGCAGAACC AGCGAGGTGG CCGAATCTTC CTGCAGGATA TAAAGGTAAG TAGATCCTAG
  GGGTGCCCTA AATGAGCGGT TAGACTTTAT TCAGGAAATG ATGGTGCACT GAGGCTTCTG
  Y
  CCTTGTGTTG TTGGCAAATG GCAGTTGTCG AGCATCCTGC GGTGAAAGCT TAGAGGAAAT
  TGAGGGCAAT CCTTTGCCCA GAGCATGATG GCTCAGTGTG AGGTGTTTCC TGGCTTGGGT
  TGATTGGTAG ATGACTTGAC CCGATGTTTC ATTCAGAAAC CAGACCGTGA TGACTGGGAG
  AGCGGGCTGA ATGCAATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50605204	NES13645671	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36580256					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605204	NES13645671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961767 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Best1	bestrophin 1			771 bp downstream
Cpgi10595	CpG island 10595			1018 bp distal
Fth1	ferritin heavy polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm36913	predicted gene, 36913			1883 bp upstream
Rr543964	regulatory region 543964			1896 bp distal
Rr543965	regulatory region 543965			1670 bp distal
Rr543966	regulatory region 543966			401 bp distal
Rr543967	regulatory region 543967			within coordinates
Tssr155003	transcription start site region 155003			1692 bp downstream
Tssr155004	transcription start site region 155004			1551 bp downstream
Tssr155005	transcription start site region 155005			1285 bp downstream
Tssr155006	transcription start site region 155006			184 bp downstream
Tssr155007	transcription start site region 155007			111 bp downstream
Tssr155008	transcription start site region 155008			154 bp upstream
Tssr155009	transcription start site region 155009			500 bp upstream
Tssr155010	transcription start site region 155010			690 bp upstream
Tssr158131	transcription start site region 158131			1968 bp upstream
Tssr158132	transcription start site region 158132			1954 bp upstream
Tssr158133	transcription start site region 158133			1897 bp upstream
Tssr158134	transcription start site region 158134			1872 bp upstream
Tssr158135	transcription start site region 158135			1836 bp upstream
Tssr158136	transcription start site region 158136			1463 bp upstream
Tssr158137	transcription start site region 158137			166 bp upstream
Tssr158138	transcription start site region 158138			77 bp upstream
Tssr158139	transcription start site region 158139			182 bp downstream
Tssr158140	transcription start site region 158140			403 bp downstream
Tssr158141	transcription start site region 158141			454 bp downstream
Tssr158142	transcription start site region 158142			470 bp downstream
Tssr158143	transcription start site region 158143			529 bp downstream
Tssr158144	transcription start site region 158144			686 bp downstream