rs36580642 SNP Detail

Summary

• ID
  rs36580642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80597798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCCACT CTCCCGTCCT
  CCCACATCTC TCCACCCTCC CCGGGTCCTT TCAGAGTAGG AAGGACTTGC ACTTCAAAGT
  CACATGGGTC GTTCTCAAGG ATGCTTCTCC TTAGCCCTCA GAGAACCGTT TGTGGAACTC
  GTGAGGGATG ACAAAGACTA TGACAAACCT GGCTTACCCT CAGGTCCCGA GGGAACACAG
  W
  CACTTTTTGG CACTCTGGCC ACAGACTCAG AGCTTTCCGC ATGCCTGGCT TACCCTGAAA
  AGCCCTTGCC TCTCCAGGAG CGTGACCCTG GCAGGGCCCA ACAGGACTAA CCTTTGGGTC
  CTCCGTTGTC TCTAAATAGA GGAACTCGGG GACACTGTAG AAACGCATGA ACTGAAAGTG
  GTGCTTGTCA CTTGGAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50521918	NES13678041	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36580642					SNP	A	A	T	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50521918	NES13678041	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80597798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10304	CpG island 10304	310 bp proximal
Gm54039	predicted gene, 54039	within coordinates
Tssr152111	transcription start site region 152111	607 bp upstream
Tssr152112	transcription start site region 152112	644 bp upstream
Tssr154031	transcription start site region 154031	197 bp downstream