rs3658066 SNP Detail

Summary

• ID
  rs3658066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88501388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GAACCTCAGA GCTCCTCTTG
  Y
  CCCACCCTTT TGGCACAGAT ACTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5033975	WI_WGS_3_89388650	WI	MOUSE	f	SNP			T	C
ss45485842	mCV23479692	ABI	CRAMUS_MOUSE	f	SNP	C	T		C	C
ss135470497	ENSMUSSNP3714189	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss320835712	CHEV_3_88398003	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3658066					SNP	C	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88501388 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	1891 bp downstream
Rr397772	regulatory region 397772	1825 bp downstream
Rr397773	regulatory region 397773	441 bp downstream
Rr579835	regulatory region 579835	1965 bp distal
Tssr29977	transcription start site region 29977	968 bp downstream
Tssr29978	transcription start site region 29978	939 bp downstream
Tssr29979	transcription start site region 29979	894 bp downstream
Tssr29980	transcription start site region 29980	12 bp upstream