rs36580746 SNP Detail

Summary

• ID
  rs36580746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:91221555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGAGTG GATGGAGCAC
  TGGATGAGAG TAAGGTACTT TCTGAAACTG TATAACTCAC TCAGGCAACT GGGGAATCAT
  TTAGTAAATT AGAATGGCAT CCTTAGAAGT TGTTAGCAAG GGTAAAATGT ACCCAAACAT
  CTCTCTGGTG ACACAAAAGA GCTAATGAGT GCTCAAAGCA TTCTTAAAGA GTTTTCGAAG
  Y
  GCAAAAACAA ATATAACTCC CCAAGTACCA GTTTACAGCA TGTATTGTGT GAGTGTAAGA
  GGCAGTCAAG GTCTTTGGTC ACACAAGGGG ACATTGCAAC AATGATGTCT TGTCATGATG
  GGGTCTGTGA AACATTTCCT CCCACAATGT CCAGGGAGAG ATAACAGTTA TGATAATGGA
  GATCTGGTCA GCAAGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50891787	NES14223872	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36580746					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50891787	NES14223872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:91221555 () rs orientation: forward

Symbol	Name	Function Class
Rr223928	regulatory region 223928	1697 bp proximal
Rr229421	regulatory region 229421	356 bp distal