rs36580859 SNP Detail

Summary

• ID
  rs36580859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:105403115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCTTCAAG
  GGCAGTGTTA AATGAGATCA GGAGAGGGGA ATGGGAGACA TTTAACCCTG CTCATCAAGA
  CAAGTTAATA CAGTGTCAGA TTCCACCTCA CAGCGAGATT AAAGTCCATC TGAAACTACA
  CAGGACATTT TCTTAGAGTC CACACCGTAG AGGGGATGAT CACATATAAC TAAACACAGG
  R
  CATTTTTACT TTCCCAAACG CCACAGAGAG AAGCCCTGGA CATTCCTCAT TTTAGCCACA
  ACTCAGAAAA TTCCACACAT CCAGTCGTTC TCTAAGCTGA ATAATCTCCG GTGCTTTAGC
  TTGCTAGTTT TGTGTGTTAA TGTCCCGGAT GTAACAGTCC TCCGATGAGA CCACTGTCTT
  GTGTTTAGGA AAGATATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50792361	NES14215095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36580859					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50792361	NES14215095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105403115 () rs orientation: forward

Symbol	Name	Function Class
Rr198589	regulatory region 198589	686 bp proximal