rs36581603 SNP Detail

Summary

• ID
  rs36581603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118105479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACCCCAT GAGCAACAGT
  GGCCAAGACA AGGAGGGCCC TGAAGGGCAG CAGGGCAGCC TTCTGGAAAT GCCTTTACTG
  CTCAGTTATG CAGCTTCAAG CCTGCCCCTC TCTCTGGCCC CTACAACCCC ATCCTCATCC
  TCACTGTCAG CCTCTGGGGA GACTGAGCCA TAAACACATG ATTACCGAAG AAGCTGCAAC
  Y
  CAGACACAGA CGAATCCCAG AGGACTGGGA CGGGAGGGGG AGGGGAGGGT GACTCACCAG
  GCCTCGGGAG ACAGCTGCAC CCCAGGGATG TACACTGATA TGGGGTGCAG AGGGATGAGT
  AGGAGGGTGC CCCAGAGAGG GGCACACCTA GTATGAGTGT GGGAGGGGGC TCTCTGGTAG
  GAGTGAGGTC GATGCCCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51982062	NES14997515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36581603					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51982062	NES14997515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118105479 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Rr670847	regulatory region 670847	387 bp proximal
Rr670848	regulatory region 670848	1946 bp proximal
Tssr79606	transcription start site region 79606	608 bp upstream
Tssr79607	transcription start site region 79607	649 bp upstream