rs3658169 SNP Detail

Summary

• ID
  rs3658169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68999743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA TGAAGCTGGG CTCTCCAGTC
  Y
  CCTCAGTAGA GGATTTTCCT GTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5034078	WI_WGS_11_69690020	WI	MOUSE	f	SNP	C	T
ss132349001	ENSMUSSNP4158781	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss323727502	CHEV_11_68922419	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3658169					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68999743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	1942 bp proximal
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	1548 bp upstream
Per1	period circadian clock 1	within coordinates
Rr402659	regulatory region 402659	1655 bp upstream
Rr449875	regulatory region 449875	1112 bp proximal
Rr449876	regulatory region 449876	1655 bp proximal